Mercurial > repos > artbio > small_rna_map
comparison small_rna_map.xml @ 8:2cc2948cfa34 draft default tip
planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/small_rna_map commit b6c6b4d92a8d839e59f7ac28cb169d25ca68ef0d
| author | artbio |
|---|---|
| date | Sun, 23 Jul 2017 13:54:29 -0400 |
| parents | f924a33e1eef |
| children |
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| 7:35d3f8ac99cf | 8:2cc2948cfa34 |
|---|---|
| 1 <tool id="small_rna_map" name="small rna map" version="0.6.0"> | 1 <tool id="small_rna_map" name="small rna map" version="0.7.0"> |
| 2 <description></description> | 2 <description></description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> | 4 <requirement type="package" version="1.11.2=py27_0">numpy</requirement> |
| 5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> | 5 <requirement type="package" version="0.11.2.1=py27_0">pysam</requirement> |
| 6 <requirement type="package" version="1.3.2=r3.3.1_0">r-optparse</requirement> | 6 <requirement type="package" version="1.3.2=r3.3.1_0">r-optparse</requirement> |
| 72 <param name="extra_plot" value="Median" /> | 72 <param name="extra_plot" value="Median" /> |
| 73 <output file="output.tab" name="output_tab" /> | 73 <output file="output.tab" name="output_tab" /> |
| 74 <output file="median.pdf" name="output_pdf" /> | 74 <output file="median.pdf" name="output_pdf" /> |
| 75 </test> | 75 </test> |
| 76 <test> | 76 <test> |
| 77 <param name="input" value="input1.bam,input1.bam" ftype="bam"/> | |
| 78 <param name="extra_plot" value="Median" /> | |
| 79 <output file="doubled.tab" name="output_tab" /> | |
| 80 <output file="doubled_median.pdf" name="output_pdf" /> | |
| 81 </test> | |
| 82 <test> | |
| 83 <param name="input" value="input1.bam,input2.bam" ftype="bam"/> | 77 <param name="input" value="input1.bam,input2.bam" ftype="bam"/> |
| 84 <param name="extra_plot" value="Coverage" /> | 78 <param name="extra_plot" value="Coverage" /> |
| 85 <output file="output.tab" name="output_tab" /> | 79 <output file="output.tab" name="output_tab" /> |
| 86 <output file="coverage.pdf" name="output_pdf" /> | 80 <output file="coverage.pdf" name="output_pdf" /> |
| 87 </test> | |
| 88 <test> | |
| 89 <param name="input" value="input1.bam,input1.bam" ftype="bam"/> | |
| 90 <param name="extra_plot" value="Coverage" /> | |
| 91 <output file="doubled.tab" name="output_tab" /> | |
| 92 <output file="doubled_coverage.pdf" name="output_pdf" /> | |
| 93 </test> | 81 </test> |
| 94 <test> | 82 <test> |
| 95 <param name="input" value="input1.bam,input2.bam" ftype="bam"/> | 83 <param name="input" value="input1.bam,input2.bam" ftype="bam"/> |
| 96 <param name="extra_plot" value="Sizes" /> | 84 <param name="extra_plot" value="Sizes" /> |
| 97 <output file="output.tab" name="output_tab" /> | 85 <output file="output.tab" name="output_tab" /> |