comparison extract_transcript_to_gene_map_from_trinity.xml @ 7:20e2c68f776a draft

planemo upload for repository https://github.com/artbio/tools-artbio/tree/master/tools/rsem commit 755333360ac6714c4db1eefeffe0bf0a730a94c7

6:39b8e13b1fc9

<tool id="extract_transcript_to_gene_map_from_trinity" name="RSEM trinity fasta to gene map" version="0.4.0">
  <description>extract transcript to gene map from trinity</description>
  <requirements>
    <requirement type="package" version="1.3.0">rsem</requirement>
  </requirements>
  <command>
    extract-transcript-to-gene-map-from-trinity $trinity_fasta_file $map_file
  </command>

  <inputs>
    <param name="trinity_fasta_file" type="data" format="fasta" label="Trinity fasta file" />
  </inputs>
  <stdio>
    <exit_code range="1:"  level="fatal" description="Error Running RSEM" />
  </stdio>
  <outputs>
    <data format="tabular" name="map_file" label="${tool.name} on ${on_string}: gene map file"/>
  </outputs>
  <tests>
    <test>

7:20e2c68f776a

<tool id="extract_transcript_to_gene_map_from_trinity" name="RSEM trinity fasta to gene map" version="@WRAPPER_VERSION@">
  <description>extract transcript to gene map from trinity</description>
  <requirements>
    <requirement type="package" version="1.3.0">rsem</requirement>
  </requirements>
  <stdio>
    <exit_code range="1:"  level="fatal" description="Error Running RSEM" />
  </stdio>
  <command>
    extract-transcript-to-gene-map-from-trinity $trinity_fasta_file $map_file
  </command>
  <inputs>
    <param name="trinity_fasta_file" type="data" format="fasta" label="Trinity fasta file" />
  </inputs>
  <outputs>
    <data format="tabular" name="map_file" label="${tool.name} on ${on_string}: gene map file"/>
  </outputs>
  <tests>
    <test>