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planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
author artbio
date Wed, 27 Sep 2017 11:23:49 -0400
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966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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1 <tool id="justdiff" name="Differences between two files" version="0.6.0">
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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2 <description></description>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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3 <stdio>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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4 <exit_code range="1:" level="fatal" description="Tool exception" />
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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5 </stdio>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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6 <command detect_errors="exit_code"><![CDATA[
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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7 diff '${input1}' '${input2}' | cat > '$output'
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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8 ]]></command>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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9 <inputs>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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10 <param format="txt" name="input1" type="data" label="first file" help="first file" />
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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11 <param format="txt" name="input2" type="data" label="second file" help="second file" />
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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12 </inputs>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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13 <outputs>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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14 <data name="output" format="txt" label="diff $input1.name | $input2.name" />
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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15 </outputs>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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16 <tests>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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17 <test>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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18 <param name="input1" value="file1.txt" ftype="txt" />
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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19 <param name="input2" value="file2.txt" ftype="txt" />
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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20 <output name="output" file="diff.txt" ftype="txt"/>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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21 </test>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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22 </tests>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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23 <help>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
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966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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25 .. class:: infomark
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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27 **What it does**
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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29 Just returns the Unix-style **diff** between two files !
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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30 </help>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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31 </tool>
966452aeedf9 planemo upload for repository https://github.com/ARTbio/tools-artbio/tree/master/tools/justdiff commit 1ef8ddce2dd398b8328eb864295a3cfbe95087b3
artbio
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