Mercurial > repos > anton > vcfsort

changeset 1:08f111f3600b draft default tip

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Uploaded
author anton
date Tue, 10 Jun 2014 12:19:22 -0400
parents ca2b82f0594c
children
files vcfsort.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/vcfsort.xml	Wed May 14 14:26:25 2014 -0400
+++ b/vcfsort.xml	Tue Jun 10 12:19:22 2014 -0400
@@ -2,7 +2,7 @@
   <description>Sort VCF dataset by coordinate</description>
   <command>(grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}"</command>
   <inputs>
-    <param format="vcf" name="input1" type="data" label="Select dataset to sort"/>
+    <param format="vcf" name="input1" type="data" label="Select VCF dataset"/>
   </inputs>
   <outputs>
     <data format="vcf" name="out_file1" />
@@ -15,7 +15,7 @@
     </tests>
   <help>
 
-This tools uses native UNIX sort command to order VCF dataset in coordinate order. For technically inclined it uses the following command::
+This tool uses native UNIX sort command to order VCF dataset in coordinate order. For technically inclined the command is::
 
  (grep ^"#" INPUT_file ; grep -v ^"#" INPUT_file | LC_ALL=C sort -k1,1 -k2,2n -V) > OUTPUT_file