# HG changeset patch # User anton # Date 1402417162 14400 # Node ID 08f111f3600bca27f0938d7c766c8e395c06e29c # Parent ca2b82f0594c97fe2b42977a4eec1c95e83dceb1 Uploaded diff -r ca2b82f0594c -r 08f111f3600b vcfsort.xml --- a/vcfsort.xml Wed May 14 14:26:25 2014 -0400 +++ b/vcfsort.xml Tue Jun 10 12:19:22 2014 -0400 @@ -2,7 +2,7 @@ Sort VCF dataset by coordinate (grep ^"#" "${input1}"; grep -v ^"#" "${input1}" | LC_ALL=C sort -k1,1 -k2,2n -V) > "${out_file1}" - + @@ -15,7 +15,7 @@ -This tools uses native UNIX sort command to order VCF dataset in coordinate order. For technically inclined it uses the following command:: +This tool uses native UNIX sort command to order VCF dataset in coordinate order. For technically inclined the command is:: (grep ^"#" INPUT_file ; grep -v ^"#" INPUT_file | LC_ALL=C sort -k1,1 -k2,2n -V) > OUTPUT_file