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<?xml version="1.0"?>
<tool id="mrbayes2" name="MrBayes">
  <description>without options</description>
  <command> mb $infile > $outfile</command>
  <inputs>
    <param name="infile" type="data" format="nex" label="Nexus input file"/>
  </inputs>

  <outputs>
    <data name="outfile" format="txt"/>
  </outputs>
  <requirements>
    <requirement version="3.2.1" type="binary">mb</requirement>
  </requirements>
<help>

.. class:: warningmark

This tool takes as input a Nexus file (.nex), described here_, and should contain both a data block and a command block.

.. _here: http://en.wikipedia.org/wiki/Nexus_file. 

-----

**What it does**

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.

-----

.. class:: infomark

**TIP**

See the manual_ or the `command reference`_ for more information.  

.. _manual: http://mrbayes.sourceforge.net/manual.php
.. _command reference: http://mrbayes.sourceforge.net/commref_mb3.2.pdf


</help>
</tool>