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1 <?xml version="1.0"?>
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2 <tool id="mrbayes2" name="MrBayes">
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3 <description>without options</description>
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4 <command> mb $infile > $outfile</command>
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5 <inputs>
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6 <param name="infile" type="data" format="nex" label="Nexus input file"/>
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7 </inputs>
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8
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9 <outputs>
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10 <data name="outfile" format="txt"/>
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11 </outputs>
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12 <requirements>
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13 <requirement version="3.2.1" type="binary">mb</requirement>
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14 </requirements>
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15 <help>
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16
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17 .. class:: warningmark
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18
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19 This tool takes as input a Nexus file (.nex), described here_, and should contain both a data block and a command block.
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20
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21 .. _here: http://en.wikipedia.org/wiki/Nexus_file.
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22
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23 -----
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24
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25 **What it does**
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26
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27 MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.
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28
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29 -----
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30
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31 .. class:: infomark
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32
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33 **TIP**
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34
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35 See the manual_ or the `command reference`_ for more information.
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36
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37 .. _manual: http://mrbayes.sourceforge.net/manual.php
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38 .. _command reference: http://mrbayes.sourceforge.net/commref_mb3.2.pdf
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39
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40
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41 </help>
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42 </tool>
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43
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