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annotate predict_activity.xml @ 3:ca24a7d362b5 draft

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author anmoljh
date Wed, 18 Oct 2017 09:06:28 -0400
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1 <tool id="predict_activity" name="Predict Activity" version="1.0">
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2 <description>
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3 used to predict activity based on given model
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4 </description>
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5 <requirements>
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6 <requirement type="package" version="3.2.1">R</requirement>
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7 <requirement type="package" version="1.0">carettools</requirement>
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8 </requirements>
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9 <stdio>
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10 <exit_code range="1:" />
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11 </stdio>
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12
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13 <command interpreter="Rscript">predict_activity.R $file1 $model $output1 2>/dev/null </command>
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15 <inputs>
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16 <param name="model" type="data" format="rdata" label="Select Model" help="Select built model obtained from caret tool 'Create script from the template file'." />
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17 <param name="file1" type="data" format="csv" label="Select file have descriptor data for activity prediction" help="csv format" />
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18 </inputs>
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19
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20 <outputs>
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21 <data format="txt" name="output1" label="Prediction on $file1.name" />
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22 </outputs>
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23
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24 <tests>
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25 <test>
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26 <param name="model" value="MODEL.rdata" />
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27 <param name="file1" value="Descriptors_File_of_prediction_set.csv" />
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28 <output name="output1" file="Prediction_on_Descriptors_File_of_prediction_set.txt" compare="sim_size" delta="90000" />
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29 </test>
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30 </tests>
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31
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32 <help>
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33
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34 .. class:: infomark
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35
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36 Make sure this file **must** contain **all** or **more features** than **input** "csv file" used for **model building**
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37
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38 ----------
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39
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40 **Input "csv file" must be as follows**
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41
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42 ----------
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43
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44
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45 Example file:-
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46
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48
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49 # example.csv
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50
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51 feature1,feature2,feature3,..,featureN
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52
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53 ro1 234,2.3,34,7,..,0.9
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54
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55 ro2 432,3.4,23.1,12,..,0.12
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56
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57 ro3 692,23,12.2,19,..,0.14
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60 -----------
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61
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62 **MODEL**
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63
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64 Choose model file received from model building step.
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65
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66 Model file has "data" file format can be seen by
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67
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68 clicking on output files shown in history .
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69
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70 </help>
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71
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72 </tool>