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changeset 0:c7d2054825b6 draft

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planemo upload
author anmol
date Fri, 17 Feb 2017 10:07:17 -0500
parents
children 4890eab01889
files seqtk_seq.xml
diffstat 1 files changed, 28 insertions(+), 0 deletions(-) [+]
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line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/seqtk_seq.xml	Fri Feb 17 10:07:17 2017 -0500
@@ -0,0 +1,28 @@
+<tool id="seqtk_seq" name="Convert to FASTA (seqtk)" version="0.1.0">
+    <requirements>
+        <requirement type="package" version="1.0-r68">seqtk</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+
+    <command><![CDATA[
+        seqtk seq -a "$input1" > "$output1"
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="fastq" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="fasta" from_work_dir="2.fasta" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="2.fastq"/>
+            <output name="output1" file="2.fasta"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        /bin/sh: 1: seqtk: not found
+
+    ]]></help>
+</tool>
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