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annotate seqtk_seq.xml @ 2:2d6ec576b9a4 draft default tip

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planemo upload for repository git_url
author anmol
date Fri, 17 Feb 2017 11:56:34 -0500
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1 <tool id="seqtk_seq" name="Convert to FASTA (seqtk)" version="0.1.0">
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2 <requirements>
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3 <requirement type="package" version="1.0-r68">seqtk</requirement>
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4 </requirements>
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5 <stdio>
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6 <exit_code range="1:" />
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7 </stdio>
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8
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9 <command><![CDATA[
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10 seqtk seq -a "$input1" > "$output1"
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11 ]]></command>
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12 <inputs>
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13 <param type="data" name="input1" format="fastq" />
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14 </inputs>
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15 <outputs>
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16 <data name="output1" format="fasta" from_work_dir="2.fasta" />
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="input1" value="2.fastq"/>
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21 <output name="output1" file="2.fasta"/>
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22 </test>
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23 </tests>
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24 <help><![CDATA[
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25 /bin/sh: seqtk seq -a <input> > <output>;
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26
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27 ]]></help>
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28 </tool>