Mercurial > repos > agpetit > calculate_diameter
changeset 8:d45cecb7cfd0 draft
"planemo upload for repository https://github.com/mesocentre-clermont-auvergne/aubi_piaf commit b6488400d4478d46697019485e912c38ea2202a5-dirty"
author | agpetit |
---|---|
date | Mon, 30 May 2022 15:56:59 +0000 |
parents | f1dd5d99ea2d |
children | e5cf7698a2af |
files | cut_trajectory.py |
diffstat | 1 files changed, 5 insertions(+), 3 deletions(-) [+] |
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--- a/cut_trajectory.py Mon May 30 15:35:48 2022 +0000 +++ b/cut_trajectory.py Mon May 30 15:56:59 2022 +0000 @@ -259,12 +259,14 @@ + " -s " + gro_file + " -b " + str(v.split(",")[0]) + " -e " + str(v.split(",")[1]) + " -o " + out_traj) if arguments.verbose: - log_directory = "log/tmp/log/" + log_directory = "log/tmp/" logging_file = (log_directory + logging_file.rsplit("/", 1)[1].split(".")[0] + "_" + str(k) + ".log") - if not os.path.exists(log_directory): - os.makedirs(log_directory) + try: + os.makedirs(log_directory, exist_ok=True) + except OSError as error: + print("Directory '%s' can not be created") f_log = open(logging_file, "w") subprocess.run(bash_command, shell=True, stdout=f_log, stderr=f_log) f_log.close()