Mercurial > repos > abretaudeau > busco

changeset 2:5dcfa2968134 draft

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planemo upload
author abretaudeau
date Thu, 07 Jan 2016 06:07:24 -0500
parents e0507a86b1a2
children bf4d3d6ba3a0
files busco.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 15 deletions(-) [+]
line wrap: on
line diff
--- a/busco.xml	Thu Jan 07 05:47:22 2016 -0500
+++ b/busco.xml	Thu Jan 07 06:07:24 2016 -0500
@@ -1,10 +1,7 @@
 <tool id="busco" name="Busco" version="1.1b1">
     <description>assess genome assembly and annotation completeness</description>
     <requirements>
-        <requirement type="package" version="3.1">augustus</requirement>
-        <requirement type="package" version="2.2.31">blast_plus</requirement>
-        <requirement type="package" version="3.1b2">hmmer</requirement>
-        <requirement type="set_environment">BUSCO_DATA_PATH</requirement>
+        <requirement type="package" version="1.1b">busco</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
--- a/tool_dependencies.xml	Thu Jan 07 05:47:22 2016 -0500
+++ b/tool_dependencies.xml	Thu Jan 07 06:07:24 2016 -0500
@@ -1,15 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="trinity" version="2.0.6">
-        <repository changeset_revision="442e500aae12" name="package_trinity_2_0_6" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="bowtie" version="1.1.2">
-        <repository changeset_revision="8584a4574ab1" name="package_bowtie_1_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    <package name="busco" version="1.1b1">
+        <repository changeset_revision="8a19bbbce42e" name="package_busco_1_1b1" owner="abretaudeau" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    <package name="samtools" version="0.1.19">
-        <repository changeset_revision="0e56e4dac6e7" name="package_samtools_0_1_19" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <set_environment version="1.0">
-        <environment_variable action="set_to" name="TRINITY_MEM_OPTIONS">--max_memory 30G --bflyHeapSpaceMax 30G</environment_variable>
-    </set_environment>
 </tool_dependency>