Mercurial > repos > abims-sbr > pairwise

annotate scripts/S13_zip.py @ 1:c8af52875b0f draft

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planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
author lecorguille
date Thu, 13 Apr 2017 09:46:45 -0400
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
1 #!/usr/bin/env python
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
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c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
3 import zipfile, os, re
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
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c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
5 f_25 = "^25_.*$"
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
6 f_19 = "^19_Reciprocal.*$"
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
7
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
8 f_DNA = zipfile.ZipFile("output_file_DNA.zip", "w")
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
9 f_PROT = zipfile.ZipFile("output_file_PROT.zip", "w")
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
10
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
11 a = os.listdir("./")
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
12 a = sorted(a)
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
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c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
14 for i in a :
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
15 if re.match(f_25, i) :
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
16 f_DNA.write(i)
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
17 if re.match(f_19, i) :
c8af52875b0f planemo upload for repository https://github.com/abims-sbr/adaptsearch commit ab76075e541dd7ece1090f6b55ca508ec0fde39d
lecorguille
parents:
diff changeset
18 f_PROT.write(i)