Mercurial > repos > abims-sbr > orthogroups_tool
changeset 8:1b2c5ce47646 draft default tip
planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1
| author | lecorguille |
|---|---|
| date | Mon, 24 Sep 2018 04:31:29 -0400 |
| parents | 040fac59e39c |
| children | |
| files | macros.xml orthogroups_tool.xml |
| diffstat | 2 files changed, 5 insertions(+), 13 deletions(-) [+] |
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--- a/macros.xml Tue Jul 03 10:53:29 2018 -0400 +++ b/macros.xml Mon Sep 24 04:31:29 2018 -0400 @@ -7,13 +7,14 @@ <token name="@HELP_AUTHORS@"> .. class:: infomark -**Authors** Eric Fontanillas creates the scripts of this pipeline. +**Authors** Eric Fontanillas created the version 1 of this pipeline. Victor Mataigne developped version 2. .. class:: infomark -**Galaxy integration** ABiMS TEAM +**Galaxy integration** Julie Baffard and ABiMS TEAM, Roscoff Marine Station | Contact support.abims@sb-roscoff.fr for any questions or concerns about the Galaxy implementation of this tool. + | Credits : Gildas le Corguillé, Misharl Monsoor ---------------------------------------------------
--- a/orthogroups_tool.xml Tue Jul 03 10:53:29 2018 -0400 +++ b/orthogroups_tool.xml Mon Sep 24 04:31:29 2018 -0400 @@ -1,7 +1,7 @@ <tool name="Orthogroups_Tool" id="orthogroups_tool" version="1.0.2"> <description> - This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file. + Writes orthogroups found by OrthoFinder in fasta files (with their sequences). </description> <macros> @@ -108,10 +108,6 @@ <![CDATA[ -The script of this tool has been written by Victor Mataigne. - -------------------------------------------- - **Description** This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file. @@ -165,12 +161,7 @@ </help> <citations> - <citation type="bibtex">Credits : ABIMS team, Roscoff Marine Station</citation> - <citation type="bibtex">Contact support.abims@sb-roscoff.fr for any questions or concerns about the Galaxy implementation of this tool.</citation> - <citation type="bibtex">Author : Victor Mataigne -- Galaxy integration : Gildas Le Corguillé and Victor Mataigne. - </citation> - <citation type="bibtex">Emms, D.M. and Kelly, S. (2015) OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology 16:157. - </citation> + <citation type="doi">10.1186/s13059-015-0721-2</citation> </citations> </tool>