# HG changeset patch
# User lecorguille
# Date 1537777889 14400
# Node ID 1b2c5ce476463e2d42b91d2e7b0cc0cf57a82678
# Parent  040fac59e39c9e2141098d568a66ee69f4776ee5
planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 3c7982d775b6f3b472f6514d791edcb43cd258a1

diff -r 040fac59e39c -r 1b2c5ce47646 macros.xml
--- a/macros.xml	Tue Jul 03 10:53:29 2018 -0400
+++ b/macros.xml	Mon Sep 24 04:31:29 2018 -0400
@@ -7,13 +7,14 @@
     <token name="@HELP_AUTHORS@">
 .. class:: infomark
 
-**Authors**  Eric Fontanillas creates the scripts of this pipeline.
+**Authors**  Eric Fontanillas created the version 1 of this pipeline. Victor Mataigne developped version 2.
 
 .. class:: infomark
 
-**Galaxy integration** ABiMS TEAM
+**Galaxy integration** Julie Baffard and ABiMS TEAM, Roscoff Marine Station
 
  | Contact support.abims@sb-roscoff.fr for any questions or concerns about the Galaxy implementation of this tool.
+ | Credits : Gildas le Corguillé, Misharl Monsoor
 
 ---------------------------------------------------
 
diff -r 040fac59e39c -r 1b2c5ce47646 orthogroups_tool.xml
--- a/orthogroups_tool.xml	Tue Jul 03 10:53:29 2018 -0400
+++ b/orthogroups_tool.xml	Mon Sep 24 04:31:29 2018 -0400
@@ -1,7 +1,7 @@
 <tool name="Orthogroups_Tool" id="orthogroups_tool" version="1.0.2">
 
     <description>
-        This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file.
+        Writes orthogroups found by OrthoFinder in fasta files (with their sequences).
     </description>
 
     <macros>
@@ -108,10 +108,6 @@
 
 <![CDATA[
 
-The script of this tool has been written by Victor Mataigne.
-
--------------------------------------------
-
 **Description**
 
 This tool takes Orthogroups found by OrthoFinder and proceeds to retrieve nucleic sequences back, then write each orthogroups in its own fasta file.
@@ -165,12 +161,7 @@
     </help>
 
     <citations>
-        <citation type="bibtex">Credits : ABIMS team, Roscoff Marine Station</citation>
-        <citation type="bibtex">Contact support.abims@sb-roscoff.fr for any questions or concerns about the Galaxy implementation of this tool.</citation>
-        <citation type="bibtex">Author : Victor Mataigne -- Galaxy integration : Gildas Le Corguillé and Victor Mataigne.
-        </citation>
-        <citation type="bibtex">Emms, D.M. and Kelly, S. (2015) OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biology 16:157.
-        </citation>
+        <citation type="doi">10.1186/s13059-015-0721-2</citation>
     </citations>
 
 </tool>