view test-data/orthogroups_tool.output @ 1:3f862f346967 draft

planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit cf1b9c905931ca2ca25faa4844d45c908756472f-dirty

-This script works on the 'Orthogroups' file output of Orthofinder to split each orthogroup in a single fasta file.
-It also gets rid of orthogroups with less sequences than the number specified by the user.
  Building hashTable IDs/sequences ...

  Reading Orthogroups.txt and wrting orthogroups to separated files...
    (Dropping orthogroups of less than 2 loci.)

  Summary before paralogous filtering : 

        1 sps  2 sps  3 sps  4 sps
1 seqs      0      0      0      0
2 seqs      0      1      0      0
3 seqs      0      1      3      0
4 seqs      0      0      0      0
5 seqs      0      0      0      1
6 seqs      0      0      0      0
7 seqs      0      0      0      0
8 seqs      0      0      1      0
  Summary after paralogous filtering : 

        1 sps  2 sps  3 sps  4 sps
1 seqs      0      0      0      0
2 seqs      0      2      0      0
3 seqs      0      0      4      0
4 seqs      0      0      0      1

7 filtered orthogroups have been written in separated files
  
Filtered orthogroups are written in the directory 'filtered_orthogroups'
  
Full orthogroups files are written in the directory 'orthogroups_withParalogs'