Mercurial > repos > abims-sbr > orthogroups_tool
diff test-data/orthogroups_tool.output @ 1:3f862f346967 draft
planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit cf1b9c905931ca2ca25faa4844d45c908756472f-dirty
| author | abims-sbr |
|---|---|
| date | Wed, 17 Jan 2018 09:02:12 -0500 |
| parents | |
| children | 427dd144d915 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/orthogroups_tool.output Wed Jan 17 09:02:12 2018 -0500 @@ -0,0 +1,33 @@ + +-This script works on the 'Orthogroups' file output of Orthofinder to split each orthogroup in a single fasta file. +-It also gets rid of orthogroups with less sequences than the number specified by the user. + Building hashTable IDs/sequences ... + + Reading Orthogroups.txt and wrting orthogroups to separated files... + (Dropping orthogroups of less than 2 loci.) + + Summary before paralogous filtering : + + 1 sps 2 sps 3 sps 4 sps +1 seqs 0 0 0 0 +2 seqs 0 1 0 0 +3 seqs 0 1 3 0 +4 seqs 0 0 0 0 +5 seqs 0 0 0 1 +6 seqs 0 0 0 0 +7 seqs 0 0 0 0 +8 seqs 0 0 1 0 + Summary after paralogous filtering : + + 1 sps 2 sps 3 sps 4 sps +1 seqs 0 0 0 0 +2 seqs 0 2 0 0 +3 seqs 0 0 4 0 +4 seqs 0 0 0 1 + +7 filtered orthogroups have been written in separated files + +Filtered orthogroups are written in the directory 'filtered_orthogroups' + +Full orthogroups files are written in the directory 'orthogroups_withParalogs' +