Mercurial > repos > abims-sbr > orthogroups_tool
diff test-data/orthogroups_tool.output @ 4:427dd144d915 draft
planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
| author | abims-sbr |
|---|---|
| date | Tue, 27 Feb 2018 08:42:05 -0500 |
| parents | 3f862f346967 |
| children |
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--- a/test-data/orthogroups_tool.output Fri Jan 19 09:51:12 2018 -0500 +++ b/test-data/orthogroups_tool.output Tue Feb 27 08:42:05 2018 -0500 @@ -3,27 +3,23 @@ -It also gets rid of orthogroups with less sequences than the number specified by the user. Building hashTable IDs/sequences ... - Reading Orthogroups.txt and wrting orthogroups to separated files... + Reading Orthogroups.txt and writing orthogroups to separated files... (Dropping orthogroups of less than 2 loci.) Summary before paralogous filtering : - 1 sps 2 sps 3 sps 4 sps -1 seqs 0 0 0 0 -2 seqs 0 1 0 0 -3 seqs 0 1 3 0 -4 seqs 0 0 0 0 -5 seqs 0 0 0 1 -6 seqs 0 0 0 0 -7 seqs 0 0 0 0 -8 seqs 0 0 1 0 + 2 sps 3 sps 4 sps +2 seqs 1 0 0 +3 seqs 1 3 0 +5 seqs 0 0 1 +8 seqs 0 1 0 + Summary after paralogous filtering : - 1 sps 2 sps 3 sps 4 sps -1 seqs 0 0 0 0 -2 seqs 0 2 0 0 -3 seqs 0 0 4 0 -4 seqs 0 0 0 1 + 2 sps 3 sps 4 sps +2 seqs 2 0 0 +3 seqs 0 4 0 +4 seqs 0 0 1 7 filtered orthogroups have been written in separated files