Mercurial > repos > abims-sbr > mutcount

comparison scripts/S02b_study_seq_composition_nuc.py @ 4:5766f80370e7 draft

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planemo upload for repository htpps://github.com/abims-sbr/adaptearch commit 17acd02c547bd1f7661a846661aa99de9743efe9
author abims-sbr
date Tue, 27 Feb 2018 08:43:50 -0500
parents 988467f963f0
children 0ba551449008
comparison
equal deleted inserted replaced
3:263caa68d7bb 4:5766f80370e7
168 fileOUT_NUC.write("%.5f,%.5f,%.5f,%.5f," %(prop_A,prop_T,prop_C,prop_G)) 168 fileOUT_NUC.write("%.5f,%.5f,%.5f,%.5f," %(prop_A,prop_T,prop_C,prop_G))
169 fileOUT_percent_GC.write("%.5f," %percent_GC) 169 fileOUT_percent_GC.write("%.5f," %percent_GC)
170 fileOUT_percent_purine.write("%.5f," %percent_purine) 170 fileOUT_percent_purine.write("%.5f," %percent_purine)
171 fileOUT_Purine_Load.write("%d,%d,%d,%.5f,%.5f," %(TOTAL, DIFF_GC, DIFF_AT,PLI_GC_1000, PLI_AT_1000)) 171 fileOUT_Purine_Load.write("%d,%d,%d,%.5f,%.5f," %(TOTAL, DIFF_GC, DIFF_AT,PLI_GC_1000, PLI_AT_1000))
172 else: 172 else:
173 fileOUT_NUC.write("%s,%s,%s,%s," %("n.a","n.a","n.a","n.a")) 173 fileOUT_NUC.write("%s,%s,%s,%s," %("NA","NA","NA","NA"))
174 fileOUT_percent_GC.write("%s," %"n.a") 174 fileOUT_percent_GC.write("%s," %"NA")
175 fileOUT_percent_purine.write("%s," %"n.a") 175 fileOUT_percent_purine.write("%s," %"NA")
176 fileOUT_Purine_Load.write("%s,%s,%s,%s,%s," %("n.a","n.a","n.a","n.a","n.a")) 176 fileOUT_Purine_Load.write("%s,%s,%s,%s,%s," %("NA","NA","NA","NA","NA"))
177 177
178 fileOUT_NUC.write("\n") 178 fileOUT_NUC.write("\n")
179 fileOUT_percent_GC.write("\n") 179 fileOUT_percent_GC.write("\n")
180 fileOUT_percent_purine.write("\n") 180 fileOUT_percent_purine.write("\n")
181 fileOUT_Purine_Load.write("\n") 181 fileOUT_Purine_Load.write("\n")