Mercurial > repos > aaronquinlan > bedtools
changeset 11:0ee50862dd67 default tip
Uploaded
author | aaronquinlan |
---|---|
date | Tue, 27 Dec 2011 17:12:28 -0500 |
parents | d72fd57eb158 |
children | |
files | bedtools-galaxy/.gitignore bedtools-galaxy/genomeCoverageBed_histogram.xml bedtools-galaxy/multiIntersectBed.xml bedtools-galaxy/unionBedGraphs.xml |
diffstat | 4 files changed, 15 insertions(+), 1 deletions(-) [+] |
line wrap: on
line diff
--- a/bedtools-galaxy/.gitignore Tue Dec 27 17:05:31 2011 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -images/
--- a/bedtools-galaxy/genomeCoverageBed_histogram.xml Tue Dec 27 17:05:31 2011 -0500 +++ b/bedtools-galaxy/genomeCoverageBed_histogram.xml Tue Dec 27 17:12:28 2011 -0500 @@ -1,5 +1,10 @@ <tool id="bedtools_genomecoveragebed_histogram" name="Create a histogram of genome coverage" version="0.1.0"> <description></description> + + <requirements> + <requirement type="binary">genomeCoverageBed</requirement> + </requirements> + <command>genomeCoverageBed #if $input.ext == "bam" -ibam '$input'
--- a/bedtools-galaxy/multiIntersectBed.xml Tue Dec 27 17:05:31 2011 -0500 +++ b/bedtools-galaxy/multiIntersectBed.xml Tue Dec 27 17:12:28 2011 -0500 @@ -1,5 +1,10 @@ <tool id="bedtools_multiintersectbed" name="Identify common intervals among multiple BED files." version="0.1.0"> <description></description> + + <requirements> + <requirement type="binary">multiIntersectBed</requirement> + </requirements> + <command>multiIntersectBed $header #if $zero.value == True:
--- a/bedtools-galaxy/unionBedGraphs.xml Tue Dec 27 17:05:31 2011 -0500 +++ b/bedtools-galaxy/unionBedGraphs.xml Tue Dec 27 17:12:28 2011 -0500 @@ -1,5 +1,10 @@ <tool id="bedtools_mergebedgraph" name="Merge multiple BedGraph files" version="0.1.0"> <description></description> + + <requirements> + <requirement type="binary">unionBedGraphs</requirement> + </requirements> + <command>unionBedGraphs $header -filler '$filler'