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changeset 11:0ee50862dd67 default tip

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Uploaded
author aaronquinlan
date Tue, 27 Dec 2011 17:12:28 -0500
parents d72fd57eb158
children
files bedtools-galaxy/.gitignore bedtools-galaxy/genomeCoverageBed_histogram.xml bedtools-galaxy/multiIntersectBed.xml bedtools-galaxy/unionBedGraphs.xml
diffstat 4 files changed, 15 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bedtools-galaxy/.gitignore	Tue Dec 27 17:05:31 2011 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-images/
--- a/bedtools-galaxy/genomeCoverageBed_histogram.xml	Tue Dec 27 17:05:31 2011 -0500
+++ b/bedtools-galaxy/genomeCoverageBed_histogram.xml	Tue Dec 27 17:12:28 2011 -0500
@@ -1,5 +1,10 @@
 <tool id="bedtools_genomecoveragebed_histogram" name="Create a histogram of genome coverage" version="0.1.0">
 	<description></description>
+	
+	<requirements>
+        <requirement type="binary">genomeCoverageBed</requirement>
+    </requirements>
+    
 	<command>genomeCoverageBed
         #if $input.ext == "bam"
             -ibam '$input'
--- a/bedtools-galaxy/multiIntersectBed.xml	Tue Dec 27 17:05:31 2011 -0500
+++ b/bedtools-galaxy/multiIntersectBed.xml	Tue Dec 27 17:12:28 2011 -0500
@@ -1,5 +1,10 @@
 <tool id="bedtools_multiintersectbed" name="Identify common intervals among multiple BED files." version="0.1.0">
 	<description></description>
+	
+	<requirements>
+        <requirement type="binary">multiIntersectBed</requirement>
+    </requirements>
+    
 	<command>multiIntersectBed
 		$header
 		#if $zero.value == True:
--- a/bedtools-galaxy/unionBedGraphs.xml	Tue Dec 27 17:05:31 2011 -0500
+++ b/bedtools-galaxy/unionBedGraphs.xml	Tue Dec 27 17:12:28 2011 -0500
@@ -1,5 +1,10 @@
 <tool id="bedtools_mergebedgraph" name="Merge multiple BedGraph files" version="0.1.0">
 	<description></description>
+	
+	<requirements>
+        <requirement type="binary">unionBedGraphs</requirement>
+    </requirements>
+    
 	<command>unionBedGraphs
 		$header
 		-filler '$filler'