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Repository ncbi_blast_plus
Owner: peterjc
Synopsis: Deprecated test repository for NCBI BLAST+ wrapper
See http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus for the main Tool Shed entry.

We are now using https://testtoolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus on the Test Tool Shed to match.
Development repository: https://github.com/peterjc/galaxy_blast
Type: unrestricted
Revision: 48:b19b6addd05c
This revision can be installed: True
Times cloned / installed: 282
Dependencies of this repository

Repository blast_datatypes revision db2480de852e owned by devteam
Repository package_blast_plus_2_2_30 revision b4030d9375b2 owned by iuc

Name Version Type
blast+ 2.2.30 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Search protein domain database (PSSMs) with translated nucleotide query sequence(s) 0.1.02 any
Search translated nucleotide database with translated nucleotide query sequence(s) 0.1.02 any
low-complexity regions in protein sequences 0.1.02 any
Make profile database 0.1.02 any
Show BLAST database information from blastdbcmd 0.1.02 any
Make BLAST database 0.1.02 any
Search nucleotide database with nucleotide query sequence(s) 0.1.02 any
masks low complexity regions 0.1.02 any
Convert masking information in lower-case masked FASTA input to file formats suitable for makeblastdb 0.1.02 any
Search protein database with protein query sequence(s) 0.1.02 any
Search protein database with translated nucleotide query sequence(s) 0.1.02 any
Convert BLAST XML output to tabular 0.1.04 any
Search translated nucleotide database with protein query sequence(s) 0.1.02 any
Extract sequence(s) from BLAST database 0.1.02 any
Search protein domain database (PSSMs) with protein query sequence(s) 0.1.02 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis