Mercurial > repos > peterjc > seq_filter_by_mapping
changeset 8:69decf35d578 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/seq_filter_by_mapping commit 5fb6ee31f33e8e24c1ae5d56c93ac3e0157dad72-dirty
author | peterjc |
---|---|
date | Thu, 09 Feb 2017 11:27:06 -0500 |
parents | 681ed62af8ac |
children | c64494ea41ea |
files | tools/seq_filter_by_mapping/seq_filter_by_mapping.py |
diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Fri Feb 03 12:55:10 2017 -0500 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.py Thu Feb 09 11:27:06 2017 -0500 @@ -18,10 +18,12 @@ Use -v or --version to get the version, -h or --help for help. """ + import os -import sys import re import subprocess +import sys + from optparse import OptionParser # Parse Command Line @@ -114,6 +116,8 @@ else: # Nothing to do return name + + assert clean_name("foo/1") == "foo" assert clean_name("foo/2") == "foo" assert clean_name("bar.f") == "bar"