Mercurial > repos > peterjc > seq_filter_by_id
changeset 9:b1b4ad43caf1 draft
Uploaded v0.0.6f, development moved to GitHub
| author | peterjc |
|---|---|
| date | Tue, 17 Sep 2013 11:55:21 -0400 |
| parents | d08224a6b131 |
| children | b7ec1c9db38d |
| files | tools/filters/repository_dependencies.xml tools/filters/seq_filter_by_id.rst |
| diffstat | 2 files changed, 17 insertions(+), 15 deletions(-) [+] |
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--- a/tools/filters/repository_dependencies.xml Fri Sep 13 06:12:47 2013 -0400 +++ b/tools/filters/repository_dependencies.xml Tue Sep 17 11:55:21 2013 -0400 @@ -2,5 +2,5 @@ <repositories description="This requires Biopython as a dependency."> <!-- Leave out the tool shed and revision to get the current tool shed and latest revision at the time of upload --> -<repository changeset_revision="54e5c64b0460" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> +<repository changeset_revision="2f6c871cfa35" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </repositories>
--- a/tools/filters/seq_filter_by_id.rst Fri Sep 13 06:12:47 2013 -0400 +++ b/tools/filters/seq_filter_by_id.rst Tue Sep 17 11:55:21 2013 -0400 @@ -59,17 +59,18 @@ ======= ====================================================================== Version Changes ------- ---------------------------------------------------------------------- -v0.0.1 - Initial version, combining three separate scripts for each file format. -v0.0.4 - Record script version when run from Galaxy. - - Faster FASTA code which preserves the original line wrapping. - - Basic unit test included. -v0.0.5 - Check for errors using Python script's return code. - - Cope with malformed FASTA entries without an identifier. -v0.0.6 - Link to Tool Shed added to help text and this documentation. - - Automated installation of the Biopython dependency. - - Use reStructuredText for this README file. - - Adopt standard MIT License. - - Updated citation information (Cock et al. 2013). +v0.0.1 - Initial version, combining three separate scripts for each file format. +v0.0.4 - Record script version when run from Galaxy. + - Faster FASTA code which preserves the original line wrapping. + - Basic unit test included. +v0.0.5 - Check for errors using Python script's return code. + - Cope with malformed FASTA entries without an identifier. +v0.0.6 - Link to Tool Shed added to help text and this documentation. + - Automated installation of the Biopython dependency. + - Use reStructuredText for this README file. + - Adopt standard MIT License. + - Updated citation information (Cock et al. 2013). + - Development moved to GitHub, https://github.com/peterjc/pico_galaxy ======= ====================================================================== @@ -77,11 +78,12 @@ Developers ========== -This script and related tools are being developed on the following hg branch: +This script and related tools were initially developed on the following hg branches: +http://bitbucket.org/peterjc/galaxy-central/src/fasta_filter http://bitbucket.org/peterjc/galaxy-central/src/tools -This incorporates the previously used hg branch: -http://bitbucket.org/peterjc/galaxy-central/src/fasta_filter +Development has now moved to a dedicated GitHub repository: +https://github.com/peterjc/pico_galaxy/tree/master/tools For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder::