Mercurial > repos > peterjc > seq_filter_by_id
changeset 5:00153c4efec3 draft
Uploaded v0.0.6b which includes the Biopython dependency
| author | peterjc |
|---|---|
| date | Mon, 29 Jul 2013 09:18:49 -0400 |
| parents | 3b990ab4ae04 |
| children | c311a9e32a60 |
| files | tools/filters/repository_dependencies.xml tools/filters/seq_filter_by_id.py tools/filters/seq_filter_by_id.rst |
| diffstat | 3 files changed, 12 insertions(+), 5 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/filters/repository_dependencies.xml Mon Jul 29 09:18:49 2013 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<repositories description="This requires Biopython as a dependency."> +<!-- Leave out the tool shed and revision to get the current + tool shed and latest revision at the time of upload --> +<repository changeset_revision="627c7b41b970" name="package_biopython_1_61" owner="biopython" toolshed="http://testtoolshed.g2.bx.psu.edu" /> +</repositories>
--- a/tools/filters/seq_filter_by_id.py Wed Jul 24 11:53:21 2013 -0400 +++ b/tools/filters/seq_filter_by_id.py Mon Jul 29 09:18:49 2013 -0400 @@ -27,7 +27,7 @@ This script is copyright 2010-2013 by Peter Cock, The James Hutton Institute (formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved. -See accompanying text file for licence details (MIT/BSD style). +See accompanying text file for licence details (MIT license). This is version 0.1.0 of the script, use -v or --version to get the version. """
--- a/tools/filters/seq_filter_by_id.rst Wed Jul 24 11:53:21 2013 -0400 +++ b/tools/filters/seq_filter_by_id.rst Mon Jul 29 09:18:49 2013 -0400 @@ -85,14 +85,15 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf seq_filter_by_id.tar.gz tools/filters/seq_filter_by_id.* test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular + $ tar -czf seq_filter_by_id.tar.gz tools/filters/seq_filter_by_id.* tools/filters/repository_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular Check this worked:: $ tar -tzf seq_filter_by_id.tar.gz - filter/seq_filter_by_id.py - filter/seq_filter_by_id.rst - filter/seq_filter_by_id.xml + tools/filters/seq_filter_by_id.py + tools/filters/seq_filter_by_id.rst + tools/filters/seq_filter_by_id.xml + tools/filters/repository_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular