Mercurial > repos > peterjc > package_mira_4_9_5
changeset 7:0098fe3690de draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_4_9_5 commit 5c6f46188dec8364b2306c05cae45ff50d3d3e06-dirty
| author | peterjc |
|---|---|
| date | Thu, 02 Feb 2017 11:51:21 -0500 |
| parents | 28020b797d22 |
| children | b614a5abf31c |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 0 insertions(+), 61 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Feb 02 11:32:46 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,61 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="MIRA" version="4.9.5"> - <install version="1.0"> - <actions_group> - <!-- Download the binaries for MIRA compatible with 64-bit OSX. --> - <!-- Currently unavailable... - <actions architecture="x86_64" os="darwin"> - <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_darwin14.3.0_x86_64_static.tar.bz2</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - </actions> - --> - <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> - <actions architecture="x86_64" os="linux"> - <!-- http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_linux-gnu_x86_64_static.tar.bz2 --> - <action type="download_by_url" sha256sum="3848885cb041cd9bf7aa8f220dd3f084443f5060fa433b669f7d28880ba4c61f">https://depot.galaxyproject.org/software/mira/mira_4.9.5_linux_x64.tar.bz2</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - </actions> - <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> - <actions> - <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> - <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> - <action type="shell_command">uname</action> - <action type="shell_command">arch</action> - <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> - <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action> - <action type="shell_command">false</action> - <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> - </actions> - <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> - </action> - <!-- Note we append a trailing slash as currently expected by the wrapper XML file --> - <action type="set_environment"> - <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable> - </action> - </actions_group> - </install> - <readme> -Downloads MIRA v4.9.5 from Sourceforge, requesting Bastien's precompiled binaries -for 64 bit (x86_64) Linux. Currently the Mac OS X binaries are not available. - -Other platforms where compilation from source would be required (e.g. 32 bit Linux) -are not supported by this automated installation script. - -http://chevreux.org/projects_mira.html -http://sourceforge.net/projects/mira-assembler/ - -The environment variable ``$MIRA4_9`` will point to the folder containing the -binaries (with a trailing slash), and this is also pre-pended to the``$PATH`` -variable. - </readme> - </package> -</tool_dependency>