Mercurial > repos > peterjc > package_mira_3_4_1_1
changeset 3:94e6e78e21d5 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit 20744823cf038fb5e887f7cba0b473d3af404cc3-dirty
| author | peterjc |
|---|---|
| date | Wed, 01 Feb 2017 12:30:31 -0500 |
| parents | 5424ac61b2d4 |
| children | a50610140295 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 0 insertions(+), 47 deletions(-) [+] |
line wrap: on
line diff
--- a/tool_dependencies.xml Thu Oct 15 13:12:01 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,47 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - <package name="MIRA" version="3.4.1.1"> - <install version="1.0"> - <actions_group> - <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> - <actions architecture="x86_64" os="linux"> - <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - </actions> - <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> - <actions> - <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> - <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> - <action type="shell_command">uname</action> - <action type="shell_command">arch</action> - <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> - <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action> - <action type="shell_command">false</action> - <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> - </actions> - <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> - <action type="set_environment"> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> - </action> - <action type="set_environment"> - <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable> - </action> - </actions_group> - </install> - <readme> -Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries -for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we -could use once the Galaxy installation framework allow that kind of flexibility. - -http://chevreux.org/projects_mira.html -http://sourceforge.net/projects/mira-assembler/ - -The environment variable ``$MIRA3`` will point to the folder containing the binaries, -which is also pre-pended to the ``$PATH`` variable. - </readme> - </package> -</tool_dependency> -