Mercurial > repos > peterjc > ncbi_blast_plus
changeset 6:e77e30f1deeb draft
Uploaded v0.0.19 preview take 3, fixes RPS-BLAST and RPS-TBLASTN output labelling.
| author | peterjc |
|---|---|
| date | Thu, 25 Apr 2013 09:01:28 -0400 |
| parents | d42346e675c4 |
| children | 08be1b2b0bf6 |
| files | tool-data/blastdb_d.loc.sample tools/ncbi_blast_plus/ncbi_makeblastdb.xml tools/ncbi_blast_plus/ncbi_rpsblast_wrapper.xml |
| diffstat | 3 files changed, 4 insertions(+), 5 deletions(-) [+] |
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--- a/tool-data/blastdb_d.loc.sample Wed Apr 17 10:04:28 2013 -0400 +++ b/tool-data/blastdb_d.loc.sample Thu Apr 25 09:01:28 2013 -0400 @@ -8,6 +8,9 @@ #It is important that the actual database name does not have a space in it, #and that there are only two tabs on each line. # +#You can download the NCBI provided databases as tar-balls from here: +#ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/ +# #So, for example, if your database is CDD and the path to your base name #is /data/blastdb/Cdd, then the blastdb_d.loc entry would look like this: #
--- a/tools/ncbi_blast_plus/ncbi_makeblastdb.xml Wed Apr 17 10:04:28 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_makeblastdb.xml Thu Apr 25 09:01:28 2013 -0400 @@ -102,10 +102,6 @@ </change_format> </data> </outputs> -<requirements> - <requirement type="binary">makeblastdb</requirement> - <requirement type="package" version="2.2.26+">blast+</requirement> -</requirements> <help> **What it does**
--- a/tools/ncbi_blast_plus/ncbi_rpsblast_wrapper.xml Wed Apr 17 10:04:28 2013 -0400 +++ b/tools/ncbi_blast_plus/ncbi_rpsblast_wrapper.xml Thu Apr 25 09:01:28 2013 -0400 @@ -113,7 +113,7 @@ </conditional> </inputs> <outputs> - <data name="output1" format="tabular" label="RPS-BLAST on ${database.fields.name}"> + <data name="output1" format="tabular" label="RPS-BLAST on ${db_opts.db_opts_selector}"> <change_format> <when input="out_format" value="0" format="txt"/> <when input="out_format" value="0 -html" format="html"/>