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changeset 35:1b8a92016045 draft

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Uploaded v0.0.22d, include sample BLAST database for makeblastdb test
author peterjc
date Thu, 28 Nov 2013 12:20:59 -0500
parents 3952ec621ea9
children 8f9023b30384
files test-data/four_human_proteins.fasta.log test-data/four_human_proteins.fasta.phd test-data/four_human_proteins.fasta.phi test-data/four_human_proteins.fasta.phr test-data/four_human_proteins.fasta.pin test-data/four_human_proteins.fasta.pog test-data/four_human_proteins.fasta.psd test-data/four_human_proteins.fasta.psi test-data/four_human_proteins.fasta.psq tools/ncbi_blast_plus/ncbi_dustmasker_wrapper.xml
diffstat 10 files changed, 19 insertions(+), 1 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/four_human_proteins.fasta.log	Thu Nov 28 12:20:59 2013 -0500
@@ -0,0 +1,10 @@
+
+
+Building a new DB, current time: 11/21/2013 11:16:27
+New DB name:   /tmp/tmpnSjpCP/tmpwAbNo4/database/files/000/dataset_2_files/blastdb
+New DB title:  Just 4 human proteins
+Sequence type: Protein
+Keep Linkouts: T
+Keep MBits: T
+Maximum file size: 1000000000B
+Adding sequences from FASTA; added 4 sequences in 0.00202417 seconds.
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/four_human_proteins.fasta.phd	Thu Nov 28 12:20:59 2013 -0500
@@ -0,0 +1,4 @@
+11117184492
+29249033410
+36665887501
+5392473183
Binary file test-data/four_human_proteins.fasta.phi has changed
Binary file test-data/four_human_proteins.fasta.phr has changed
Binary file test-data/four_human_proteins.fasta.pin has changed
Binary file test-data/four_human_proteins.fasta.pog has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/four_human_proteins.fasta.psd	Thu Nov 28 12:20:59 2013 -0500
@@ -0,0 +1,4 @@
+gnl|bl_ord_id|00
+gnl|bl_ord_id|11
+gnl|bl_ord_id|22
+gnl|bl_ord_id|33
Binary file test-data/four_human_proteins.fasta.psi has changed
Binary file test-data/four_human_proteins.fasta.psq has changed
--- a/tools/ncbi_blast_plus/ncbi_dustmasker_wrapper.xml	Thu Nov 28 08:56:39 2013 -0500
+++ b/tools/ncbi_blast_plus/ncbi_dustmasker_wrapper.xml	Thu Nov 28 12:20:59 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="ncbi_dustmasker_wrapper" name="NCBI dustmasker" version="0.0.22">
+<tool id="ncbi_dustmasker_wrapper" name="NCBI BLAST+ dustmasker" version="0.0.22">
     <!-- dustmasker wrapper from Edward Kirton and Nicola Soranzo -->
     <description>masks low complexity regions</description>
     <macros>