Mercurial > repos > peterjc > mira_assembler
changeset 18:082d6adb57a5 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/mira3/ commit 98d4929ffe5175600338056bfb7a4407cba8d21d
| author | peterjc |
|---|---|
| date | Thu, 21 May 2015 12:36:06 -0400 |
| parents | 557118c7e29e |
| children | b6397643dbb6 |
| files | tools/mira3/README.rst tools/mira3/tool_dependencies.xml |
| diffstat | 2 files changed, 2 insertions(+), 22 deletions(-) [+] |
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--- a/tools/mira3/README.rst Thu May 21 10:52:16 2015 -0400 +++ b/tools/mira3/README.rst Thu May 21 12:36:06 2015 -0400 @@ -84,6 +84,7 @@ - Updated URL for automated installation of MIRA v3.4.1.1 v0.0.11 - Tool definition now embeds citation information. - Planemo for Tool Shed upload (``.shed.yml``, internal change only). + - MIRA 3.4.1.1 dependency now declared via dedicated Tool Shed package. ======= ======================================================================
--- a/tools/mira3/tool_dependencies.xml Thu May 21 10:52:16 2015 -0400 +++ b/tools/mira3/tool_dependencies.xml Thu May 21 12:36:06 2015 -0400 @@ -1,27 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="MIRA" version="3.4.1.1"> - <install version="1.0"> - <actions> - <!-- Sourceforge doesn't offer nice clean download URLs which is a shame --> - <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2</action> - <action type="move_directory_files"> - <source_directory>bin</source_directory> - <destination_directory>$INSTALL_DIR</destination_directory> - </action> - <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> - </action> - </actions> - </install> - <readme> -Downloads MIRA v3.4 from Sourceforge, requesting Bastien's precompiled binaries -for 64bit Linux (x86_64). He also has binaries for 32bit Linux, which we could -use once the Galaxy installation framework allow that kind of flexibility. - -http://chevreux.org/projects_mira.html -http://sourceforge.net/projects/mira-assembler/ - </readme> + <repository changeset_revision="af39588c4839" name="package_mira_3_4_1_1" owner="peterjc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> </tool_dependency> -