Mercurial > repos > peterjc > fastq_paired_unpaired
changeset 4:fe469503441b draft
Uploaded v0.0.7 preview 1, added links to Tool Shed.
| author | peterjc |
|---|---|
| date | Thu, 02 May 2013 13:06:18 -0400 |
| parents | 81ac324efa49 |
| children | 9b5cd13eb78b |
| files | tools/fastq/fastq_paired_unpaired.txt tools/fastq/fastq_paired_unpaired.xml |
| diffstat | 2 files changed, 22 insertions(+), 2 deletions(-) [+] |
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--- a/tools/fastq/fastq_paired_unpaired.txt Thu May 02 11:27:46 2013 -0400 +++ b/tools/fastq/fastq_paired_unpaired.txt Thu May 02 13:06:18 2013 -0400 @@ -1,7 +1,8 @@ Galaxy tool to divide FASTQ files into paired and unpaired reads ================================================================ -This tool is copyright 2010 by Peter Cock, SCRI, UK. All rights reserved. +This tool is copyright 2010-2013 by Peter Cock, The James Hutton Institute +(formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. This tool is a short Python script (using the Biopython library functions) which @@ -12,6 +13,20 @@ Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even Color Space should all work equally well). +This tool is available from the Galaxy Tool Shed at: +http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired + + +Automated Installation +====================== + +This should be straightforward, Galaxy should automatically download and install +the tool and run the unit tests. + + +Manual Installation +=================== + There are just two files to install: * fastq_paired_unpaired.py (the Python script) @@ -39,6 +54,7 @@ v0.0.5 - Handle Illumina 1.8 style pair names v0.0.6 - Record script version when run from Galaxy - Added unit test (FASTQ file using Sanger naming) +v0.0.7 - Link to Tool Shed added to help text and this documentation. Developers
--- a/tools/fastq/fastq_paired_unpaired.xml Thu May 02 11:27:46 2013 -0400 +++ b/tools/fastq/fastq_paired_unpaired.xml Thu May 02 13:06:18 2013 -0400 @@ -1,4 +1,4 @@ -<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.0.6"> +<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.0.7"> <description>using the read name suffices</description> <version_command interpreter="python">fastq_paired_unpaired.py --version</version_command> <command interpreter="python"> @@ -97,5 +97,9 @@ * WTSI_1055_4p17.p1kapIBF paired with WTSI_1055_4p17.q1kapIBR * WTSI_1055_4p17.p1kpIBF paired with WTSI_1055_4p17.q1kpIBR +**Citation** + +This tool is available to install into other Galaxy Instances via the Galaxy +Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired </help> </tool>