Mercurial > repos > peterjc > fastq_paired_unpaired
changeset 24:f9dd4ba8c8a6 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_paired_unpaired commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty
| author | peterjc |
|---|---|
| date | Fri, 09 Nov 2018 10:53:10 -0500 |
| parents | 84e08689d35d |
| children | 7bb90baebdf5 |
| files | tools/fastq_paired_unpaired/fastq_paired_unpaired.py tools/fastq_paired_unpaired/fastq_paired_unpaired.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/tools/fastq_paired_unpaired/fastq_paired_unpaired.py Fri Sep 15 10:24:24 2017 -0400 +++ b/tools/fastq_paired_unpaired/fastq_paired_unpaired.py Fri Nov 09 10:53:10 2018 -0500 @@ -4,7 +4,7 @@ The input file should be a valid FASTQ file which has been sorted so that any partner forward+reverse reads are consecutive. The output files all preserve this sort order. Pairing are recognised based on standard name -suffices. See below or run the tool with no arguments for more details. +suffixes. See below or run the tool with no arguments for more details. Note that the FASTQ variant is unimportant (Sanger, Solexa, Illumina, or even Color Space should all work equally well).
--- a/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Fri Sep 15 10:24:24 2017 -0400 +++ b/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Fri Nov 09 10:53:10 2018 -0500 @@ -1,5 +1,5 @@ <tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.4"> - <description>using the read name suffices</description> + <description>using the read name suffixes</description> <requirements> <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement> <requirement type="package" version="1.67">biopython</requirement> @@ -65,7 +65,7 @@ The input file should be a valid FASTQ file which has been sorted so that any partner forward+reverse reads are consecutive. The output files all preserve this sort order. Pairing are recognised based on standard name -suffices. See below or run the tool with no arguments for more details. +suffixes. See below or run the tool with no arguments for more details. Any reads where the forward/reverse naming suffix used is not recognised are treated as orphan reads. The tool supports the /1 and /2 convention @@ -106,7 +106,7 @@ Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PeerJ 1:e167 -http://dx.doi.org/10.7717/peerj.167 +https://doi.org/10.7717/peerj.167 This tool is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired