changeset 6:2b2d75f3cf38 draft

Uploaded v0.0.8a, citation information

--- a/tools/fastq/fastq_paired_unpaired.rst	Mon Jul 29 09:26:20 2013 -0400
+++ b/tools/fastq/fastq_paired_unpaired.rst	Wed Sep 11 06:13:52 2013 -0400
@@ -3,7 +3,7 @@
 
 This tool is copyright 2010-2013 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
-See the licence text below.
+See the licence text below (MIT licence).
 
 This tool is a short Python script which divides a FASTQ file into paired
 reads, and single or orphan reads. You can have separate files for the
@@ -59,6 +59,7 @@
 v0.0.7  - Link to Tool Shed added to help text and this documentation.
 v0.0.8  - Use reStructuredText for this README file.
         - Adopt standard MIT License.
+        - Updated citation information (Cock et al. 2013).
 ======= ======================================================================
 
 

--- a/tools/fastq/fastq_paired_unpaired.xml	Mon Jul 29 09:26:20 2013 -0400
+++ b/tools/fastq/fastq_paired_unpaired.xml	Wed Sep 11 06:13:52 2013 -0400
@@ -97,7 +97,15 @@
  * WTSI_1055_4p17.p1kapIBF paired with WTSI_1055_4p17.q1kapIBR
  * WTSI_1055_4p17.p1kpIBF paired with WTSI_1055_4p17.q1kpIBR
 
-**Citation**
+**References**
+
+If you use this Galaxy tool in work leading to a scientific publication please
+cite the following paper:
+
+Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
+Galaxy tools and workflows for sequence analysis with applications
+in molecular plant pathology. PeerJ 1:e167
+http://dx.doi.org/10.7717/peerj.167
 
 This tool is available to install into other Galaxy Instances via the Galaxy
 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/fastq_paired_unpaired