Mercurial > repos > peterjc > fastq_pair_names
changeset 5:73b6d81cda48 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/fastq_pair_names commit acaced2b77f2789558b3d4c210ec373f8bdbb7e9-dirty
| author | peterjc |
|---|---|
| date | Thu, 11 May 2017 18:34:08 -0400 |
| parents | 004654008290 |
| children | 7df3a874f232 |
| files | tools/fastq_pair_names/README.rst tools/fastq_pair_names/fastq_pair_names.xml |
| diffstat | 2 files changed, 7 insertions(+), 8 deletions(-) [+] |
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--- a/tools/fastq_pair_names/README.rst Wed May 10 12:41:10 2017 -0400 +++ b/tools/fastq_pair_names/README.rst Thu May 11 18:34:08 2017 -0400 @@ -57,6 +57,8 @@ - Planemo for Tool Shed upload (``.shed.yml``, internal change only). v0.0.4 - Explicit dependency on ``galaxy_sequence_utils``. - Minor internal changes to Python script for error reporting & style. +v0.0.5 - Use ``<command detect_errors="aggressive">`` (internal change only). + - Single quote command line arguments (internal change only). ======= ======================================================================
--- a/tools/fastq_pair_names/fastq_pair_names.xml Wed May 10 12:41:10 2017 -0400 +++ b/tools/fastq_pair_names/fastq_pair_names.xml Thu May 11 18:34:08 2017 -0400 @@ -3,14 +3,11 @@ <requirements> <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement> </requirements> - <stdio> - <!-- Anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> - <version_command interpreter="python">fastq_pair_names.py --version</version_command> - <command interpreter="python"> -fastq_pair_names.py $output_paired $output_singles #for i in $input_fastq#"${i}" #end for# + <version_command> +python $__tool_directory__/fastq_pair_names.py --version + </version_command> + <command detect_errors="aggressive"> +python $__tool_directory__/fastq_pair_names.py '$output_paired' '$output_singles' #for i in $input_fastq#'${i}' #end for# </command> <inputs> <param name="input_fastq" type="data" multiple="true" format="fastq" label="FASTQ file(s)"/>