Mercurial > repos > peterjc > clinod

changeset 11:deb6cb2db22b draft

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Uploaded v0.0.5, take 11, try 2 threads to run on Galaxy Test cluster
author peterjc
date Wed, 29 May 2013 07:26:37 -0400
parents 04aed2f80910
children 1d09534d6dcd
files tools/clinod/clinod.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tools/clinod/clinod.xml	Sat May 25 09:24:02 2013 -0400
+++ b/tools/clinod/clinod.xml	Wed May 29 07:26:37 2013 -0400
@@ -7,7 +7,7 @@
     <command>
 ##The Galaxy Tool Shed installation should define $CLINOD to point at folder
 ##containing both clinod-1.3.jar and the batchman binary:
-java -jar \$CLINOD/clinod-1.3.jar -in="$fasta_file" -out="$tabular_file" -t=4 -f=MEDIUM_TAB -nonols -clean_sequence
+java -jar \$CLINOD/clinod-1.3.jar -in="$fasta_file" -out="$tabular_file" -t=2 -f=MEDIUM_TAB -nonols -clean_sequence
 ##I want the number of threads to be a Galaxy config option...
 ##TODO - Make the -clean_sequence argument a parameter?
     </command>