Mercurial > repos > peterjc > align_back_trans
changeset 22:8e60cb66f032 draft
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans commit 3ab3d1a9650dec0533344d710ceb027e482d2b10-dirty
| author | peterjc |
|---|---|
| date | Fri, 09 Nov 2018 10:44:00 -0500 |
| parents | 5e2bb75817e2 |
| children | 38a03cb41fba |
| files | tools/align_back_trans/align_back_trans.py tools/align_back_trans/align_back_trans.xml |
| diffstat | 2 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tools/align_back_trans/align_back_trans.py Fri Sep 15 10:21:00 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.py Fri Nov 09 10:44:00 2018 -0500 @@ -1,5 +1,5 @@ #!/usr/bin/env python -"""Back-translate a protein alignment to nucleotides +"""Back-translate a protein alignment to nucleotides. This tool is a short Python script (using Biopython library functions) to load a protein alignment, and matching nucleotide FASTA file of unaligned @@ -35,7 +35,7 @@ def check_trans(identifier, nuc, prot, table): - """Returns nucleotide sequence if works (can remove trailing stop)""" + """Return nucleotide sequence, if works (can remove trailing stop).""" if len(nuc) % 3: sys.exit("Nucleotide sequence for %s is length %i (not a multiple of three)" % (identifier, len(nuc)))
--- a/tools/align_back_trans/align_back_trans.xml Fri Sep 15 10:21:00 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.xml Fri Nov 09 10:44:00 2018 -0500 @@ -123,7 +123,7 @@ Cock et al (2009). Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. -http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +https://doi.org/10.1093/bioinformatics/btp163 pmid:19304878. This tool is available to install into other Galaxy Instances via the Galaxy Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/align_back_trans