| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.5 (this tool) |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.4 |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.3 |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.2 |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.1 |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.2.0 |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.1.2 |
| testtoolshed.g2.bx.psu.edu/repos/peterjc/sample_seqs/sample_seqs/0.0.1 |
| sample_seqs |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| biopython | 1.67 | package |
| Additional information about this tool |
python $__tool_directory__/sample_seqs.py -f '$input_file.ext' -i '$input_file' -o '$output_file'
#if str($sampling.type) == "everyNth":
-n '${sampling.every_n}'
#elif str($sampling.type) == "percentage":
-p '${sampling.percent}'
#else
-c '${sampling.count}'
#end if
#if $interleaved
--interleaved
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input_file: get_orf_input.Suis_ORF.prot.fasta sampling|every_n: 100 sampling|type: everyNth |
name: value |
get_orf_input.Suis_ORF.prot.fasta value |
| Test-2 |
input_file: ecoli.fastq sampling|every_n: 100 sampling|type: everyNth |
name: value |
ecoli.fastq value |
| Test-3 |
input_file: ecoli.fastq sampling|every_n: 100 sampling|type: everyNth interleaved: True |
name: value |
ecoli.fastq value |
| Test-4 |
input_file: MID4_GLZRM4E04_rnd30_frclip.sff sampling|every_n: 5 sampling|type: everyNth |
name: value |
MID4_GLZRM4E04_rnd30_frclip.sff value |
| Test-5 |
input_file: get_orf_input.Suis_ORF.prot.fasta sampling|percent: 1.0 sampling|type: percentage |
name: value |
get_orf_input.Suis_ORF.prot.fasta value |
| Test-6 |
input_file: get_orf_input.Suis_ORF.prot.fasta sampling|every_n: 100 sampling|type: everyNth interleaved: True |
name: value |
get_orf_input.Suis_ORF.prot.fasta value |
| Test-7 |
input_file: get_orf_input.Suis_ORF.prot.fasta sampling|count: 2910 sampling|type: desired_count |
name: value |
get_orf_input.Suis_ORF.prot.fasta value |
| Test-8 |
input_file: get_orf_input.Suis_ORF.prot.fasta sampling|count: 10 sampling|type: desired_count interleaved: True |
name: value |
get_orf_input.Suis_ORF.prot.fasta value |
| Test-9 |
input_file: ecoli.fastq sampling|percent: 1.0 sampling|type: percentage |
name: value |
ecoli.fastq value |
| Test-10 |
input_file: ecoli.fastq sampling|count: 10 sampling|type: desired_count |
name: value |
ecoli.fastq value |
| Test-11 |
input_file: ecoli.sample_C10.fastq sampling|count: 10 sampling|type: desired_count |
name: value |
ecoli.sample_C10.fastq value |
| Test-12 |
input_file: MID4_GLZRM4E04_rnd30_frclip.sff sampling|percent: 20.0 sampling|type: percentage |
name: value |
MID4_GLZRM4E04_rnd30_frclip.sff value |
| Test-13 |
input_file: MID4_GLZRM4E04_rnd30_frclip.sff sampling|every_n: 5 sampling|type: everyNth interleaved: True |
name: value |
MID4_GLZRM4E04_rnd30_frclip.sff value |
| Test-14 |
input_file: MID4_GLZRM4E04_rnd30_frclip.sff sampling|count: 25 sampling|type: desired_count |
name: value |
MID4_GLZRM4E04_rnd30_frclip.sff value |
| Test-15 |
input_file: MID4_GLZRM4E04_rnd30_frclip.sff sampling|count: 1 sampling|type: desired_count |
name: value |
MID4_GLZRM4E04_rnd30_frclip.sff value |
| Test-16 |
input_file: MID4_GLZRM4E04_rnd30_frclip.sff sampling|count: 30 sampling|type: desired_count |
MID4_GLZRM4E04_rnd30_frclip.sff |