| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| testtoolshed.g2.bx.psu.edu/repos/dave/freebayes/freebayes/1.3.1 (this tool) |
| freebayes |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| freebayes | 1.3.1 | package |
| samtools | 1.9 | package |
| gawk | 4.1.3 | package |
| parallel | 20170422 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_source|batchmode|processmode: individual reference_source|batchmode|input_bams: freebayes-phix174.bam reference_source|ref_file: freebayes-phix174.fasta options_type|options_type_selector: simple reference_source|reference_source_selector: history |
attributes: name |
freebayes-phix174.bam freebayes-phix174.fasta name |
| Test-2 |
reference_source|batchmode|processmode: individual reference_source|batchmode|input_bams: freebayes-phix174.bam reference_source|ref_file: freebayes-phix174.fasta options_type|options_type_selector: naive_w_filters reference_source|reference_source_selector: history |
attributes: name |
freebayes-phix174.bam freebayes-phix174.fasta name |
| Test-3 |
reference_source|batchmode|processmode: individual reference_source|batchmode|input_bams: freebayes-phix174.bam reference_source|ref_file: freebayes-phix174.fasta options_type|options_type_selector: naive_w_filters reference_source|reference_source_selector: history |
attributes: name |
freebayes-phix174.bam freebayes-phix174.fasta name |
| Test-4 |
reference_source|batchmode|input_bams: freebayes-phix174.bam options_type|population_model|P: 1 reference_source|reference_source_selector: history reference_source|batchmode|processmode: individual options_type|options_type_selector: full reference_source|ref_file: freebayes-phix174.fasta options_type|population_model|population_model_selector: set |
attributes: name |
freebayes-phix174.bam freebayes-phix174.fasta name |