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Repository qdnaseq
Name: qdnaseq
Owner: stef
Synopsis: Wrapper for R Bioconductor package QDNAseq
Quantitative DNA sequencing for chromosomal aberrations
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/stef/qdnaseq/d2ea2b842c21
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/stef/qdnaseq
Type: unrestricted
Revision: 88:d2ea2b842c21
This revision can be installed: True
Times cloned / installed: 512
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_samtools_0_1_18 revision c0f72bdba484 owned by devteam (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.18 package
QDNASEQ_PATH set_environment

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Perform regioning on QDNAseq data 0.0.1 any
Export QDNAseq data to tabular 0.0.1 any
Quantitative copy number abberation detection 1.0.0 any
Plot QDNAseq copy-number/segments/calls profile 0.0.1 any