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Repository samtools_depad
Name: samtools_depad
Owner: peterjc
Synopsis: Re-align a SAM/BAM file with a padded reference (using samtools depad)
Runs "samtools depad" to remap a SAM/BAM file using a padded reference (with
gap characters) giving a new BAM file using an unpadded (ungapped) reference.
Content homepage: http://www.htslib.org/
Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/samtools_depad
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/peterjc/samtools_depad/cf3c85c72c57
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/peterjc/samtools_depad
Type: unrestricted
Revision: 12:cf3c85c72c57
This revision can be installed: True
Times cloned / installed: 487
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_samtools_0_1_19 revision a0ab0fae27e5 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.19 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
samtools depad 0.0.5 16.01

Categories
Assembly - Tools for working with assemblies
SAM - Tools for manipulating alignments in the SAM format
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis