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Repository align_back_trans
Owner: peterjc
Synopsis: Thread nucleotides onto a protein alignment (back-translation)
Takes an input file of aligned protein sequences (typically FASTA or Clustal
format), and a matching file of unaligned nucleotide sequences (FASTA format,
using the same identifiers), and threads the nucleotide sequences onto the
protein alignment to produce a codon aware nucleotide alignment - which can
be viewed as a back translation.
Type: unrestricted
Revision: 23:38a03cb41fba
This revision can be installed: True
Times cloned / installed: 564
Dependencies of this repository

Repository package_numpy_1_9 revision 1e2b7e63dec2 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 35d6b30ef137 owned by iuc (prior install required)
Repository package_python_2_7 revision a03693de8e0c owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_readline_6_3 revision de22495ddf2b owned by iuc (prior install required)
Repository package_bzlib_1_0 revision 29f79feefc77 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision c9d30f1de10a owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision 9ba893c2353f owned by iuc (prior install required)
Repository package_gdbm_1_11 revision 77ea468f199e owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_libtool_2_4 revision 5ccfb33b5622 owned by iuc (prior install required)

Name Version Type
biopython 1.67 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Gives a codon aware alignment 0.0.10 16.01

Categories
Fasta Manipulation - Tools for manipulating fasta data
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis