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Repository htseq_bams_to_count_matrix
Name: htseq_bams_to_count_matrix
Owner: fubar
Synopsis: Multiple bam/sam to count matrix wrapper using htseq code
ready for beta testing. Companion program - generates count matrix from bam files for differential count edgeR/DESeq2/Voom tool.
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/fubar/htseq_bams_to_count_matrix/d300bc688e95
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/fubar/htseq_bams_to_count_matrix
Type: unrestricted
Revision: 64:d300bc688e95
This revision can be installed: True
Times cloned / installed: 839
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_numpy_1_7 revision 5c489d2d630b owned by iuc (prior install required)
Repository package_freetype_2_4 revision 77d40d53da67 owned by iuc (prior install required)
Repository package_libpng_1_6_7 revision d1a409e4f67d owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 2c2c0ccd0f37 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_imaging_1_1_7 revision 428ac4a9db59 owned by iuc (prior install required)
Repository package_atlas_3_10 revision 35d6b30ef137 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_tiff_4_0_3 revision 2c2c0ccd0f37 owned by iuc (prior install required)
Repository package_freetype_2_4 revision 77d40d53da67 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_pysam_0_7_6 revision 247e5e5bee87 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
htseq 0.5.4p3 package
matplotlib 1.2.1 package
pysam 0.7.6 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
using HTSeq code 0.5 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Statistics - Tools for generating statistics