| EdgeR: Differential expression analysis of RNA-seq expression profiles with biological replication. This wrapper allows the user to: 1) Create a design matrix upon the gene-count files from your history (featureCounts; HT-Seq count) 2) Define your contrast and run EdgeR |
hg clone https://testtoolshed.g2.bx.psu.edu/repos/yhoogstrate/edger_with_design_matrix
| Name | Version | Type | |
|---|---|---|---|
| design_matrix_creator | 1.0.0 | package | |
| edger | 3.11.0 | package | |
| edger_dge_table_to_bedgraph | 1.0.0 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| RNA-Seq gene expression analysis using edgeR (R package) | 3.11.0.b | any | |
| Create design- from an expression matrix | 1.0.0.a | any | |
| Create a full expression matrix by selecting the desired columns from specific count tables | 1.0.0.b | any | |
| EdgeR's "differentially expressed genes" table to bedgraph(s) | 1.0.0.b | any | |