| Cuffnorm is part of Cufflinks. Cuffnorm is similar to cuffdiff, but does not perform differential expression testing. It provides normalized gene expression tables for use in downstream tools (R/matlab/...).
Please cite: Trapnell C, Williams BA, Pertea G, Mortazavi AM, Kwan G, van Baren MJ, Salzberg SL, Wold B, Pachter L. Transcript assembly and abundance estimation from RNA-Seq reveals thousands of new transcripts and switching among isoforms. Nature Biotechnology doi:10.1038/nbt.1621 |
hg clone https://testtoolshed.g2.bx.psu.edu/repos/geert-vandeweyer/cuffnorm
| Repository cuffquant_datatype revision 27ec5b7e46aa owned by geert-vandeweyer |
| Repository package_cufflinks_2_2_1 revision 8eb211c00b6f owned by geert-vandeweyer |
| Name | Version | Type | |
|---|---|---|---|
| cufflinks | 2.2.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Create normalized expression levels | 0.0.1 | any | |