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Repository bcftools
Name: bcftools
Owner: wrtz
Synopsis: BCFtools annotate, filter, merge, norm, query, reheader, view
BCFtools is a program for variant calling and manipulating VCFs and BCFs. It replaces the original samtools BCF calling from the bcftools subdirectory of samtools, and renders obsolete most of the perl VCFtools.
Type: unrestricted
Revision: 31:cec8628756b5
This revision can be installed: True
Times cloned / installed: 190
Dependencies of this repository

Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_ncurses_5_9 revision ad27910a950c owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_tabix_0_2_6 revision 54f8b9bf9b6c owned by iuc (prior install required)

Name Version Type
bcftools 1.3 package
samtools 1.2 package
tabix 0.2.6 package

Contents of this repository

Name Description Version Minimum Galaxy Version
Modify header of VCF/BCF files, change sample names 1.0.0 any
Left-align and normalize indels, check if REF alleles match reference, change multiallelic format 1.0.0 any
Index tab-delimited file 1.0.0 any
Add or remove annotations 1.0.0 any
Run bgzip compression on file 1.0.0 any
Convert, view, subset, and filter VCF/BCF files 1.0.0 any
Merge multiple VCF/BCF files 1.0.0 any
Index FASTA file using samtools faidx command 1.0.0 any
Apply fixed-threshold filters 1.0.0 any
Output VCF/BCF fields in user-defined format 1.0.0 any

Categories
Variant Analysis - Tools for sequence variation data such as WGA and VCF