Repository circlator
Name: circlator
Owner: leomrtns
Synopsis: A tool to circularize genome assemblies
Circlator will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all 
reads that map to contig ends and comparing the resulting contigs with the input assembly. 
The input assembly must not be too fragmented. Although Circlator will join contigs together, whenever it can identify contigs 
that can be unambiguously joined, its main aim is to circularize the core genome and plasmids.
Content homepage: https://sanger-pathogens.github.io/circlator/
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/leomrtns/circlator/c27229938e09
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/leomrtns/circlator
Type: unrestricted
Revision: 2:c27229938e09
This revision can be installed: True
Times cloned / installed: 107

Contents of this repository

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Name Description Version Minimum Galaxy Version
This task runs the complete Circlator pipeline. It runs the tasks: progcheck, mapreads, bam2reads, assemble, merge, clean, fixstart. 0.1.0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis