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Repository cistrome_beta

Name: cistrome_beta

Owner: jjohnson

Synopsis: Cistrome BETA

Detailed description:

Binding and Expression Target Analysis (BETA) is
a software package that integrates ChIP-seq of
transcription factors or chromatin regulators
with differential gene expression data to
infer direct target genes.
BETA has three functions
  (1) to predict whether the factor has
  activating or repressive function;
  (2) to infer the factor's target genes;
  (3) to identify the motif of the factor and its
  collaborators which might modulate the factor's
  activating or repressive function.

http://cistrome.org/BETA/index.html

doi: 10.1038/nprot.2013.150

Content homepage: http://cistrome.org/BETA/

Development repository: https://github.com/jj-umn/galaxytools/tree/master/cistrome_beta

Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/jjohnson/cistrome_beta/c119110a5b47

Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/jjohnson/cistrome_beta

Type: unrestricted

Revision: 5:c119110a5b47

This revision can be installed: True

Times cloned / installed: 145

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
BETA-minus: Targets prediction with binding only View tool metadata	Predict the factors (TFs or CRs) direct target genes by only binding data	1.0.7.0	16.01
BETA-basic: Binding and Expression Target Analysis View tool metadata	Predict the factors (TFs or CRs) direct target genes by combining the binding and expression data	1.0.7.0	16.01
BETA-plus: Binding and Expression Target prediction and motif analysis View tool metadata	Predict the factors (TFs or CRs) direct target genes by combining the binding and expression data, then do motif analysis on target regions	1.0.7.0	16.01