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Repository mira4_assembler
Name: mira4_assembler
Owner: peterjc
Synopsis: MIRA 4.0 assembler
Wrapper for core functionality of assembly tool MIRA 4.0. Accepts data
from Solexa/Illumina, Roche 454, Ion Torrent, PacBio and Sanger capillary
sequencing. The key MIRA output files are captured, but the other files are
deleted when the job finishes.
Content homepage: http://chevreux.org/projects_mira.html
Development repository: https://github.com/peterjc/galaxy_mira/tree/master/tools/mira4_0
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler/bbf14bb9607b
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/peterjc/mira4_assembler
Type: unrestricted
Revision: 39:bbf14bb9607b
This revision can be installed: True
Times cloned / installed: 832
Dependencies of this repository

Repository dependencies - This requires the MIRA datatype definitions (e.g. the MIRA Assembly Format).
Repository package_samtools_0_1_19 revision a0ab0fae27e5 owned by iuc
Repository package_mira_4_0_2 revision b4efe6c4acf7 owned by peterjc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
MIRA 4.0.2 package
samtools 0.1.19 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Filter reads using kmer matches 0.0.11 16.01
Takes Sanger, Roche 454, Solexa/Illumina, Ion Torrent and PacBio reads 0.0.11 16.01
Maps Sanger, Roche 454, Solexa/Illumina, Ion Torrent and PacBio reads 0.0.11 16.01

Categories
Assembly - Tools for working with assemblies
Next Gen Mappers - Tools for the analysis and handling of Next Gen sequencing data