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* name: python, type: package, version: 2.7.10
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Repository crossmap
Name: crossmap
Owner: yhoogstrate
Synopsis: CrossMap: Convert genome coordinates or annotation files between genome assemblies
CrossMap is versatile tool to convert genome coordinates or annotation files between genome
assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF,
GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF
and VCF, reading from remote servers and file compression are supported.

http://crossmap.sourceforge.net/
Content homepage: http://crossmap.sourceforge.net/
Development repository: https://github.com/ErasmusMC-Bioinformatics/crossmap_galaxy_wrapper
Link to this repository: https://testtoolshed.g2.bx.psu.edu/view/yhoogstrate/crossmap/9e99c09ebe84
Clone this repository: hg clone https://testtoolshed.g2.bx.psu.edu/repos/yhoogstrate/crossmap
Type: unrestricted
Revision: 37:9e99c09ebe84
This revision can be installed: True
Times cloned / installed: 324
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_readline_6_3 revision de22495ddf2b owned by iuc (prior install required)
Repository package_bzlib_1_0 revision 29f79feefc77 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision c9d30f1de10a owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision 9ba893c2353f owned by iuc (prior install required)
Repository package_gdbm_1_11 revision 77ea468f199e owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_python_2_7_10 revision a28e3c30828d owned by iuc (prior install required)
Repository package_nose_1_3_7 revision 2e16c2edb44d owned by yhoogstrate (prior install required)
Repository package_python_2_7_numpy_1_9 revision 5f2b261ffc5b owned by iuc (prior install required)
Repository package_cython_0_23_1 revision 075588111eef owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_libtool_2_4 revision 5ccfb33b5622 owned by iuc (prior install required)
Repository package_python_2_7 revision a03693de8e0c owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 3348f1acee2a owned by iuc (prior install required)
Repository package_readline_6_3 revision de22495ddf2b owned by iuc (prior install required)
Repository package_bzlib_1_0 revision 29f79feefc77 owned by iuc (prior install required)
Repository package_xz_5_0_5 revision c9d30f1de10a owned by iuc (prior install required)
Repository package_sqlite_3_8_3 revision 9ba893c2353f owned by iuc (prior install required)
Repository package_gdbm_1_11 revision 77ea468f199e owned by iuc (prior install required)
Repository package_ncurses_6_0 revision 15e2190c87ca owned by iuc (prior install required)
Repository package_atlas_3_10 revision 35d6b30ef137 owned by iuc (prior install required)
Repository package_python_2_7_10 revision a28e3c30828d owned by iuc (prior install required)
Repository package_python_2_7 revision a03693de8e0c owned by iuc (prior install required)
Repository package_ucsc_tools_312 revision ceda74761368 owned by iuc (prior install required)

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
crossmap 0.2 package
python 2.7.10 package
ucsc_tools 312 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Convert genome coordinates or annotation files between genome assemblies 0.2.e any

Categories
Genomic Interval Operations - Tools for operating on genomic intervals