| Variant annotation and effect prediction tools. It annotates and predicts the effects of variants on genes. This repository should manage tool dependencies. There are data managers for the Galaxy admin to download genome databases. SnpEff is developed by Pablo Cingolani http://snpeff.sourceforge.net/ |
hg clone https://testtoolshed.g2.bx.psu.edu/repos/jjohnson/snpsift
| Repository package_snpeff_4_1 revision 733a2dcb9853 owned by iuc |
| Name | Version | Type | |
|---|---|---|---|
| snpEff | 4.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Annotate with variant type | 4.1.0 | any | |
| SNPs from dbSnp | 4.1.0 | any | |
| basic checks for Vcf specification compliance | 4.1.0 | any | |
| remove INFO field annotations | 4.1.0 | any | |
| Filter variants using intervals | 4.1.0 | any | |
| Filter variants using arbitrary expressions | 4.1.0 | any | |
| Count samples are in 'case' and 'control' groups. | 4.1.0 | any | |
| from a VCF file inot a tabular file | 4.1.0 | any | |